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Variable Name
record_id
state
Year
Month
lab_name
labno
in_catchment
Comments
campy_onsite
stec_onsite
salm_onsite
shig_onsite
vib_onsite
yers_onsite
list_onsite
cyclo_onsite
noro_onsite
offsite_lab
Type Length
Char
500
Char
50
Num
8
Char
50
Char
500
Char
500
Char
500
Char
331
Char
500
Char
500
Char
500
Char
500
Char
500
Char
500
Char
500
Char
500
Char
500
Char
500
2
campy_practices
Char
500
2
stec_practices
Char
500
2
salm_practices
Char
500
2
shig_practices
Char
500
2
vib_practices
Char
500
2
yers_practices
Char
500
2
cyclo_practices
Char
500
Restricted Use/All CDC Staff
#
2
noro_practices
Char
500
2
practices_other
Char
500
3
campy_methods
Char
500
3
stec_methods
Char
500
3
salm_methods
Char
500
3
shig_methods
Char
500
3
vib_methods
Char
500
3
yers_methods
Char
500
3
methods_other
Char
500
3a
stec_shiga_offsite
Char
500
3a
stec_shiga_offsite_lab
Char
500
3b
stec_cx_offsite
Char
500
3b
stec_cx_offsite_lab
Char
500
4
cyclo_methods
Char
500
4
cyclo_cidt_other
Char
500
4a
cyclo_micro
Char
500
4a
cyclo_micro_othertest
Char
500
Restricted Use/All CDC Staff
#
5
5
5
5
5
campy_reflex
salm_reflex
shig_reflex
vib_reflex
yers_reflex
Char
Char
Char
Char
Char
500
500
500
500
500
5a
campy_reflex_yes
Char
500
5a
salm_reflex_yes
Char
500
5a
shig_reflex_yes
Char
500
5a
vib_reflex_yes
Char
500
5a
yers_reflex_yes
Char
500
5b
campy_reflex_sometimes
Char
500
5b
salm_reflex_sometimes
Char
500
5b
shig_reflex_sometimes
Char
500
5b
vib_reflex_sometimes
Char
500
5b
yers_reflex_sometimes
Char
500
5c
campy_reflex_no
Char
500
5c
salm_reflex_no
Char
500
Restricted Use/All CDC Staff
#
5c
shig_reflex_no
Char
500
5c
vib_reflex_no
Char
500
5c
yers_reflex_no
Char
500
6
pcr_brand
Char
500
6
6
pcr_brand_multiple
pcr_brand_other
Char
Char
500
500
7
campy_ag
Char
500
7
campy_ag_other
Char
500
8
stec_ag
Char
500
8
stec_ag_other
Char
500
9
noro_methods
Char
500
Restricted Use/All CDC Staff
#
9
noro_gene_targets
Char
500
9
noro_other_methods
Char
500
10
list_meth_bloodculture
Char
500
11
list_meth_csf
Char
500
12
list_pcr_bloodculture
Char
500
12
list_other_pcr_bc
Char
500
13
list_pcr_csf
Char
500
13
list_other_pcr_csf
Char
500
15
campy_submission
Char
500
15
stec_submission
Char
500
15
salm_submission
Char
500
15
shig_submission
Char
500
15
vib_submission
Char
500
15
yers_submission
Char
500
Restricted Use/All CDC Staff
#
15
yers_submission
Char
500
16
list_submission
Char
500
17
collection_method
Char
500
Restricted Use/All CDC Staff
Description
Record ID
Site
Year that the survey was completed
Month that the survey was completed
Hospital/Laboratory name
Laboratory Number (Unique ID)
Is this lab in catchment?
Comments
Does your lab test stool specimens on site for Campylobacter?
Does your lab test stool specimens on site for STEC?
Does your lab test stool specimens on site for Salmonella?
Does your lab test stool specimens on site for Shigella?
Does your lab test stool specimens on site for Vibrio?
Does your lab test stool specimens on site for Yersinia?
Does your lab test stool specimens on site for Listeria?
Does your lab test stool specimens on site for Cyclospora?
Does your lab test stool specimens on site for Norovirus?
If not, to which lab do you send specimens for testing?
When does your lab test stool for Campylobacter?
When does your lab test stool for STEC?
When does your lab test stool for Salmonella?
When does your lab test stool for Shigella?
When does your lab test stool for Vibrio?
When does your lab test stool for Yersinia?
When does your lab test stool for Cyclospora?
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Restricted Use/All CDC Staff
When does your lab test stool for norovirus?
If other, specify protocol for determining when stool specimens are tested for
enteric pathogens
What methods are initially used to detect Campylobacter in stool specimens?
What methods are initially used to detect STEC in stool specimens?
What methods are initially used to detect Salmonella in stool specimens?
What methods are initially used to detect Shigella in stool specimens?
What methods are initially used to detect Vibrio in stool specimens?
What methods are initially used to detect Yersinia in stool specimens?
If other CIDT used, specify:
If only culture used for E.coli, are specimens sent to a different lab for Shiga
toxin testing?
If yes, to which lab?
If only non-culture tests are used for E.coli, are specimens sent to a different
lab for culture testing?
If yes, to which lab?
What methods are used to detect Cyclospora in stool specimens?
If other test, specify:
What techniques are used for microscopy?
If other microscopy test used, specify:
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Restricted Use/All CDC Staff
If Campy is identified using a CIDT, is culture attempted on site?
If Salmonella is identified using a CIDT, is culture attempted on site?
If Shigella is identified using a CIDT, is culture attempted on site?
If Vibrio is identified using a CIDT, is culture attempted on site?
If Yersinia is identified using a CIDT, is culture attempted on site?
If yes, why is culture attempted on site? (Campy)
If yes, why is culture attempted on site? (Salmonella)
If yes, why is culture attempted on site? (Shigella)
If yes, why is culture attempted on site? (Vibrio)
If yes, why is culture attempted on site? (Yersinia)
If sometimes, when is culture attempted on site? (Campy)
If sometimes, when is culture attempted on site? (Salmonella)
If sometimes, when is culture attempted on site? (Shigella)
If sometimes, when is culture attempted on site? (Vibrio)
If sometimes, when is culture attempted on site? (Yersinia)
If No, do you send stool to a reference lab for culture? (Campy)
If No, do you send stool to a reference lab for culture? (Salmonella)
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Restricted Use/All CDC Staff
If No, do you send stool to a reference lab for culture? (Shigella)
If No, do you send stool to a reference lab for culture? (Vibrio)
If No, do you send stool to a reference lab for culture? (Yersinia)
What is the brand name of the PCR test used to detect Campylobacter, STEC,
Salmonella, Shigella, Vibrio, Yersinia, or Cyclospora?
If multiple PCR tests are used, specify:
If other PCR used, specify:
What is the brand name of the Campy antigen test?
If other Campy antigen test used, specify:
What is the brand name of the Shiga toxin antigen test?
If other Shiga toxin antigen test used, specify:
What is the brand name of the CIDT used to detect norovirus?
#
Restricted Use/All CDC Staff
Specify gene targets for PCR assay developed in house or by published PCR
method:
If other antigen test, PCR, or method used, specify:
Which of the following protocols are followed to detect Listeria from blood
culture?
Which of the following protocols are followed to detect Listeria from CSF?
What is the brand name of the blood culture PCR test?
If other blood culture PCR used, specify:
What is the brand name of CSF PCR test?
If other CSF PCR used, specify:
Which specimens are sent to the PHL when Campy is detected?
Which specimens are sent to the PHL when STEC is detected?
Which specimens are sent to the PHL when Salmonella is detected?
Which specimens are sent to the PHL when Shigella is detected?
Which specimens are sent to the PHL when Vibrio is detected?
Which specimens are sent to the PHL when Yersinia is detected?
#
Restricted Use/All CDC Staff
Which specimens are sent to the PHL when Yersinia is detected?
Which specimens are sent to the PHL when Listeria is detected?
For this lab, how were the data for this survey collected?
#
Restricted Use/All CDC Staff
Legal Values
Varies by state
CA, CO, CT, GA, MD, MN, NM, NY, OR, TN
2012-2023
Text
Free text
Free text
YES, NO
Free text
YES, NO
YES, NO
YES, NO
YES, NO
YES, NO
YES, NO
YES, NO
YES, NO
YES, NO
Free text
ALL
REQUEST
PROJECTS
OTHER
ALL
REQUEST
PROJECTS
OTHER
ALL
REQUEST
PROJECTS
OTHER
ALL
REQUEST
PROJECTS
OTHER
ALL
REQUEST
PROJECTS
OTHER
ALL
REQUEST
PROJECTS
OTHER
ALL
REQUEST
PROJECTS
OTHER
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Restricted Use/All CDC Staff
ALL
REQUEST
PROJECTS
OTHER
Free text
CULTURE
PCR
ANTIGEN
OTHER
CULTURE
PCR
ANTIGEN
OTHER
CULTURE
PCR
ANTIGEN
OTHER
CULTURE
PCR
ANTIGEN
OTHER
CULTURE
PCR
ANTIGEN
OTHER
CULTURE
PCR
ANTIGEN
OTHER
Free text
YES, NO
Free text
YES, NO
Free text
MICRO
PCR
OTHER
Free text
WETMOUNT
UV
SMEAR
OTHER
Free text
#
Restricted Use/All CDC Staff
YES, SOME, NO
YES, SOME, NO
YES, SOME, NO
YES, SOME, NO
YES, SOME, NO
CONFIRM
AST
EIP
PUBLICH
CONFIRM
AST
EIP
PUBLICH
CONFIRM
AST
EIP
PUBLICH
CONFIRM
AST
EIP
PUBLICH
CONFIRM
AST
EIP
PUBLICH
REQUEST
EIP
SPE
REQUEST
EIP
SPE
REQUEST
EIP
SPE
REQUEST
EIP
SPE
REQUEST
EIP
SPE
ALWAYS
SOME
NEVER
ALWAYS
SOME
NEVER
#
Restricted Use/All CDC Staff
ALWAYS
SOME
NEVER
ALWAYS
SOME
NEVER
ALWAYS
SOME
NEVER
BIOCODE
BIOFIRE
BDMAX
GREAT BASIN
HOLOGIC
LUMINEXVER
LUMINEX
MEDICAL
LDT
MULTIPLE
OTHER
Free text
Free text
ABBOT
ICS
PREMIER
PROSPECT
XPECT
TECHLAB
OTHER
Free text
ABBOT
VTEC
DUOPATH
ICS
PREMIER
PROSPECT
OTHER
Free text
FILMARRAY
GENEEXPERT
PCR
RIDASCREEN
VERIGENE
XTAG
ARIES
OTHER
#
Restricted Use/All CDC Staff
Free text
Free text
CIDT_CX
CIDT_THEN_CX
CIDTONLY
CXONLY
CIDT_CX
CIDT_THEN_CX_ROUTINE
CIDT_THEN_CX_ORDER
CIDT_OR_CX_ORDER
CIDTONLY
CXONLY
FILMBC
FILMBC2
GENMARK
LUMINEX
LDT
OTHER
Free text
filmME
LDT
Other
Free text
ISOLATES
STOOL
BROTH
NONE
ISOLATES
STOOL
BROTH
NONE
ISOLATES
STOOL
BROTH
NONE
ISOLATES
STOOL
BROTH
NONE
ISOLATES
STOOL
BROTH
NONE
ISOLATES
STOOL
#
Restricted Use/All CDC Staff
BROTH
NONE
ISOLATES
BLOOD
CSF
BROTH
NONE
#
Restricted Use/All CDC Staff
Full Survey Response
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
#
Restricted Use/All CDC Staff
On all stool specimens submitted
Only when specifically requested/ordered
Only for specific projects/outbreaks
Other (specify)
Stool culture
Multiplex PCR/NAAT gastrointestinal panel
Stool immunoassay (EIA microplate or lateral flow assay)
Other CIDT test (specify)
Stool culture
Multiplex PCR/NAAT gastrointestinal panel
Stool immunoassay (EIA microplate or lateral flow assay)
Other CIDT test (specify)
Stool culture
Multiplex PCR/NAAT gastrointestinal panel
Stool immunoassay (EIA microplate or lateral flow assay)
Other CIDT test (specify)
Stool culture
Multiplex PCR/NAAT gastrointestinal panel
Stool immunoassay (EIA microplate or lateral flow assay)
Other CIDT test (specify)
Stool culture
Multiplex PCR/NAAT gastrointestinal panel
Stool immunoassay (EIA microplate or lateral flow assay)
Other CIDT test (specify)
Stool culture
Multiplex PCR/NAAT gastrointestinal panel
Stool immunoassay (EIA microplate or lateral flow assay)
Other CIDT test (specify)
Microscopy
PCR
Other (specify)
Wet mount (unenhanced)
Wet mount with UV fluorescence
Modified acid-fast or modified safranin stained smear
Other (specify)
#
Restricted Use/All CDC Staff
Yes, always; Sometimes; No, never
Yes, always; Sometimes; No, never
Yes, always; Sometimes; No, never
Yes, always; Sometimes; No, never
Yes, always; Sometimes; No, never
Routine practice to confirm result
Routine practice for antimicrobial susceptibility testing
For EIP purposes
For public health purposes
Routine practice to confirm result
Routine practice for antimicrobial susceptibility testing
For EIP purposes
For public health purposes
Routine practice to confirm result
Routine practice for antimicrobial susceptibility testing
For EIP purposes
For public health purposes
Routine practice to confirm result
Routine practice for antimicrobial susceptibility testing
For EIP purposes
For public health purposes
Routine practice to confirm result
Routine practice for antimicrobial susceptibility testing
For EIP purposes
For public health purposes
When requested by provider
For special projects including EIP purposes or outbreaks
For special populations
When requested by provider
For special projects including EIP purposes or outbreaks
For special populations
When requested by provider
For special projects including EIP purposes or outbreaks
For special populations
When requested by provider
For special projects including EIP purposes or outbreaks
For special populations
When requested by provider
For special projects including EIP purposes or outbreaks
For special populations
Yes, always
Sometimes (e.g., when ordered by provider)
No, never
Yes, always
Sometimes (e.g., when ordered by provider)
No, never
#
Restricted Use/All CDC Staff
Yes, always
Sometimes (e.g., when ordered by provider)
No, never
Yes, always
Sometimes (e.g., when ordered by provider)
No, never
Yes, always
Sometimes (e.g., when ordered by provider)
No, never
Biocode Gastrointestinal Pathogen Panel (GPP)
BioFire FilmArray Gastrointestinal (GI)
BD Max Enteric Bacterial and/or BD Max Extended Enteric Bacterial
Great Basin Scientific Stool
Hologic Prodesse ProGastro SSCS
Luminex Verigene Enteric Pathogens
Luminex xTAG Gastrointestinal Pathogens
Medical
Diagnostics
Laboratory-developed test
(LDT)
Multiple PCR tests are used (specify)
Other commercially available PCR test (specify)
Abbot Campylobacter Quik Chek
Meridian ImmunoCard STAT! CAMPY
Meridian Premier CAMPY
Remel ProSpecT Campylobacter
Remel Xpect Campylobacter
Techlab Campylobacter Quik Chek
(specify)
Abbot Shiga Toxin Quik Chek
Denka Seiken VTEC Screen
Merck Duopath STEC Rapid Test
Meridian ImmunoCard STAT! EHEC
Meridian Premier EHEC
Remel ProSpecT STEC
(specify)
Other antigen test
Other antigen-based test
BioFire FilmArray Gastrointestinal (GI) Panel
Cepheid Xpert Norovirus Test
RT-qPCR assay developed 'in house' or a published RT-qPCR method, specify gene targets
R-biopharm Ridascreen Norovirus Test
Luminex Verigene Enteric Pathogens Test
Luminex xTag Gastrointestinal Pathogens Panel
Luminex ARIES Norovirus assay
Other antigen test, other PCR, or other method (specify)
#
Restricted Use/All CDC Staff
PCR concurrently used with culture
PCR performed first, if positive, reflex culture performed
Only PCR panels, no additional culture is performed
Only culture, no PCR test is performed
PCR concurrenlty used with culture
PCR performed first; if positive, reflex culture performed (routine)
PCR performed first; if positive, reflex culture performed if ordered by provider
PCR or culture or some combination thereof based on provider order
Only PCR panels, no culture is performed
Only culture, no PCR test is performed
BioFire FilmArray Blood Culture Identification (BCID)
BioFire FilmArray Blood Culture Identification 2 (BCID2)
Genmark E Plex BCID
Luminex Gram-Positive Blood Culture
Laboratory-developed test that detects Listeria
Other commercially available PCR test (specify)
BioFire FilmArray Meningitis/Encephalitis (ME)
Lab-developed test that detects Listeria
Other commercially available PCR test (specify)
Isolates
Stool/transport media
Broth
No specimens are sent to the PHL
Isolates
Stool/transport media
Broth
No specimens are sent to the PHL
Isolates
Stool/transport media
Broth
No specimens are sent to the PHL
Isolates
Stool/transport media
Broth
No specimens are sent to the PHL
Isolates
Stool/transport media
Broth
No specimens are sent to the PHL
Isolates
Stool/transport media
Broth
No specimens are sent to the PHL
#
Restricted Use/All CDC Staff
Isolates
Stool/transport media
Broth
No specimens are sent to the PHL
Isolates
Blood samples
CSF samples
Broth
No specimens are sent to the PHL
#
Restricted Use/All CDC Staff
File Type | application/pdf |
Author | Ray, Logan (CDC/OID/NCEZID) |
File Modified | 2023-02-28 |
File Created | 2023-02-28 |