Enterprise Laboratory Information System
Contact:
Rudith Vice
National Center for Emerging and Zoonotic Infectious Diseases
Centers for Disease Control and Prevention
1600 Clifton Road, NE
Atlanta, Georgia 30333
Email: [email protected]
1. Circumstances Making the Collection of Information Necessary 3
2. Purpose and Use of Information Collection 3
3. Use of Improved Information Technology and Burden Reduction 3
4. Efforts to Identify Duplication and Use of Similar Information 4
5. Impact on Small Businesses or Other Small Entities 4
6. Consequences of Collecting the Information Less Frequently 4
7. Special Circumstances Relating to the Guidelines of 5 CFR 1320.5 4
8. Comments in Response to the Federal Register Notice and Efforts to Consult Outside the Agency 4
9. Explanation of Any Payment or Gift to Respondents 4
10. Protection of the Privacy and Confidentiality of Information Provided by Respondents 5
11. Institutional Review Board (IRB) and Justification for Sensitive Questions 5
12. Estimates of Annualized Burden Hours and Costs 5
13. Estimates of Other Total Annual Cost Burden to Respondents or Record Keepers 6
14. Annualized Cost to the Government 6
15. Explanation for Program Changes or Adjustments 6
16. Plans for Tabulation and Publication and Project Time Schedule 6
17. Reason(s) Display of OMB Expiration Date is Inappropriate 7
18. Exceptions to Certification for Paperwork Reduction Act Submissions 7
Goal of the study:
To record specimen metadata and patient data related to test order
requests submitted by external partners (state public health
laboratories (SPHLs), International organizations, federal
institutions, hospitals, doctor’s offices, etc.) to the CDC
Infectious Diseases testing laboratories. Intended use of the
resulting data: The collected specimen and patient data are
used to help determine the appropriate testing that will be
performed by the CDC testing laboratories. Methods to be used to
collect: 1.) CDC Specimen Submission Form 50.34
v3.3.3 and 2.) Global File Accessioning Template v4.7. The subpopulation to be
studied: None How data will be analyzed:
The data will be analyzed
based on the type of test order requested, external partner
location, accompanying patient history, and epidemiological
information provided.
This is a Revision of a currently approved collection requesting approval for three years.
The CDC Infectious Disease (ID) Laboratories launched a major laboratory informatics project in 2004 to implement a single interoperable Laboratory Information Management System (LIMS), in all infectious diseases specimen-testing laboratories. The project was initiated to resolve challenges in data sharing across laboratories that were encountered during the 2001 anthrax response. Over 90 CDC laboratories were identified as needing to use the common LIMS.
Today the Enterprise Laboratory Information Management System (ELIMS) is a web-based system that Infectious Diseases laboratorians use to accession specimen data, patient information, record results, report data, and manage other laboratory data and documentation. EILMS supports clinical, research, outbreak, and other relevant response work through managing multiple aspects of laboratory informatics. ELIMS’s organizational objectives seek to improve laboratory capacity and capabilities.
Authorizing legislation (Attachment 1) comes from Section 301 of the Public Health Service Act (42 U.S.C. 241).
The collection of specimen information designated for testing by the CDC occurs on a regular and recurring basis (multiple times per day) using an electronic PDF file called the CDC Specimen Submission 50.34 Form (Attachment 2A) or an electronic XSLX file called the Global File Accessioning Template (Attachment 2B).
Hospitals, doctor offices, medical clinics, commercial testing labs, universities, state public health laboratories, U.S. federal institutions and foreign institutions use the CDC Specimen Submission Form 50.34 when submitting a single specimen to CDC Infectious Diseases laboratories for testing. The CDC Specimen Submission 50.34 Form consists of over 200 data entry fields (of which five are mandatory fields that must be completed by the submitter) that captures information about the specimen being sent to the CDC for testing. The type of data captured on the 50.34 Form identifies the origin of the specimen (human, animal, food, environmental, medical device or biologic), CDC test order name/code, specimen information, patient information (as applicable), animal information (as applicable) information about the submitting organization requesting the testing, patient history (as applicable), owner information and animal history (as applicable) and epidemiological information. The collection of this type of data is pertinent in ensuring a specimen’s testing results are linked to the correct patient and the final test reports are delivered to the appropriate submitting organization to aid in making proper health-related decisions related to the patient. Furthermore, the data provided on this form may be used by the CDC to identify sources of potential outbreaks and other public-health related events. When the form is filled out, a user in the submitting organization prints a hard copy of it that will be included in the specimen’s shipping package sent to the CDC. The printed form has barcodes on it that allow the CDC testing laboratory to scan its data directly into ELIMS where the specimen’s testing lifecycle is tracked and managed.
Likewise, the Global File Accessioning Template records the same data as the 50.34 Form but provides the capability to submit information for a batch of specimens (typically 50-1000 specimens per batch) to a specific CDC laboratory for testing. The CDC testing laboratory electronically uploads the Global File Accessioning Template into ELIMS where the batch of specimens are then logged and are ready to be tracked through their respective testing and reporting workflow.
The collection of information related to the use of the CDC Specimen Submission 50.34 Form and the Global File Accessioning Template involve the use of Improved Information Technology to reduce the burden in the collection of information and utilize existing data exchange capabilities available in the LIMS.
CDC Specimen Submission 50.34 Form
Is an electronic fillable PDF form with multiple picklist-enabled data fields that enforce the use of standardized values to promote efficiency, consistency, and quality in the collection of information for a single specimen.
Utilizes barcode data encoding technology that allows for fast and accurate electronic transfer of information from the paper copy of the form into the LIMS.
Global File Accessioning Template
Is an electronic fillable XLSX file with multiple picklist-enabled data fields that enforce the use of standardized values to promote efficiency, consistency, and quality in the collection of information for a large batch of specimens.
Data in the XLSX file is electronically uploaded quickly and accurately into the LIMS.
No other similar system or method of data collection exists at CDC.
.
Currently, both the CDC Specimen Submission 50.34 Form and Global File Accessioning Template require a minimum number of mandatory data fields to be completed in order to submit a specimen to the CDC for testing.
For the CDC Specimen Submission 50.34 Form these fields are Specimen Origin, Test Order Name, Specimen source (type), and Institutional e-mail.
For the Global File Accessioning Template these fields are Package ID, CDC Sample Identifier (CSID), CDC Unique Identifier (CUID), Origin (specimen), and Test order name.
Questions and data requirements for these two forms have been held to the absolute minimum required for the intended use of the information.
The frequency of data collection for both the CDC Specimen Submission 50.34 Form and Global File Accessioning Template must occur on a daily basis in order to meet the operational requirements of health care institutions who are attempting to diagnose diseases and make patient health care decisions based on specimen testing performed by the CDC.
This request fully complies with the regulation 5 CFR 1320.5.
A. A 60-day Federal Register Notice was published in the Federal Register on June 9, 2023, vol. 88, No. 111, pp. 37880-81 (Attachment 3). CDC did not receive public comments related to this notice.
B. No consultations outside of CDC occurred.
No payments, gifts, or incentives will be provided for participation in this collection.
CDC’s Information Systems Security Officer reviewed this submission and determined that the Privacy Act does apply. A Privacy Impact Assessment is included as part of this submission (Attachment 4).
The applicable statement of records notice (SORN) 09-20-0106, Specimen Handling for Testing and Related Data, Federal Register: November 24, 1986 Volume 51, Number 226, Pages 42464-42465.
Institutional Review Board (IRB)
NCEZID’s Human Subjects Advisor has determined that information collection is not research involving human subjects. IRB approval is not required (Attachment 5).
ELIMS is not a research program, and therefore, a formal STARS entry, review, and determination are not required for inclusion in the 30-day FRN document package.
Justification for Sensitive Questions
Sensitive information is collected in these forms as it relates to a patient’s symptoms, underlying illnesses/ infections and other noted health conditions. This information is necessary to help the CDC determine the type of testing needed to confirm the presence of a suspected disease.
A. Estimated Annualized Burden Hours
Responders using the CDC Specimen Submission 50.34 Form and Global File Accessioning Template typically include medical assistants at doctor’s offices and hospitals as well as medical scientists at State Public Health Laboratories. The burden was calculated using ELIMS database information for specimens submitted to the CDC using the CDC Specimen Submission 50.34 Form and the number of specimen batches submitted using the Global File Accessioning Template for a period of 12 months.
Type of Respondent |
Form Name |
No. of Respondents |
No. Responses per Respondent |
Avg. Burden per response (in hrs.) |
Total Burden (in hrs.) |
Medical Scientists, Except Epidemiologists, State Public Health Lab, Medical Assistant, Doctor’s Office/Hospital |
CDC Specimen Submission 50.34 Form |
2,098 |
12 |
5/60 |
2098 |
Medical Assistant, Doctor’s Office/Hospital |
Global File Accessioning Template |
15 |
11 |
20/60 |
55 |
Total |
|
2,153 |
B. Estimated Annualized Burden Costs
The annualized cost to respondents were based upon mean hourly wage rates for medical assistants and medical scientists information published on the Bureau of Labor Statistics-May 2022 National Occupational Employment and Wage Estimates website, https://www.bls.gov/oes/current/oes_nat.htm
Type of Respondent |
Form Name |
Total Burden Hours |
Hourly Wage Rate |
Total Respondent Costs |
19-1042 Medical Scientists, Except Epidemiologists, State Public Health Lab, 31-9092 Medical Assistant, Doctor’s Office/Hospital |
CDC Specimen Submission 50.34 Form |
2098 |
19-1042: $53.21
31-9092: $19.57
Avg Hourly Wage Rate: $36.39 |
$76,346 |
31-9092 Medical Assistant, Doctor’s Office/Hospital |
Global File Accessioning Template |
55 |
$19.57 |
$1,076 |
Total |
|
$77,422 |
There are no costs to respondents other than their time to participate.
The average annualized cost to the Federal Government to collect this information is $130,146. The federal government personnel cost estimate is based on using two resource types The first resource is a CDC laboratorian (GS-13) who is responsible for barcode scanning 25,176 (annual total count) CDC Specimen Submission 50.34 Forms into ELIMS at an average time of 12 seconds per form which calculates to 84 hours for all 25,170 forms. The CDC laboratorian (GS-13) is also responsible for preparing and uploading 3,234 Global File Accessioning Templates into ELIMS at an average time of 20 minutes per template. The 3,324 count represents Global File Accessioning Templates created by CDC laboratorians to facilitate uploading batches of specimens into ELIMS. The total time for processing 3,234 templates is 1,078 hours. The average hourly base pay of a CDC Laboratorian (GS-13) is $46.59.
The second resource type is an IT Specialist (contractor) that provides up to 600 hours annually to provide on-going production support as well as requirements identification, design, development, testing and deployment of new content to both the CDC Specimen Submission 50.34 Form and Global File Accessioning Template. The average hourly rate cost to the government for an IT Specialist to support these activities is $126.68
Estimated Annualized Cost to the Government per Activity |
|
Cost Category |
Estimated Annualized Cost |
CDC Laboratorian (GS-13) |
$54,138 |
IT Specialist (contractor) |
$76,008 |
ELIMS data collection is ongoing and continuous. There are no plans to publish findings.
The display of the OMB Expiration date is not inappropriate.
There are no exceptions to the certification.
Authorizing Legislation
Information Collection Instruments
CDC Specimen Submission 50.34 Form
Global File Accessioning Template
60-Day FRN
Privacy Impact Assessment
Human Subjects Determination
File Type | application/vnd.openxmlformats-officedocument.wordprocessingml.document |
Author | Samuel, Lee (CDC/OID/NCEZID) |
File Modified | 0000-00-00 |
File Created | 2023-08-29 |