General Permit Applications and Permit Reports (Scientific, Education, & Mgmt Activities)

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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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Papahānaumokuākea Marine National Monument
RESEARCH Permit Application

NOTE: This Permit Application (and associated Instructions) are to propose activities to be
conducted in the Papahānaumokuākea Marine National Monument. The Co-Trustees are
required to determine that issuing the requested permit is compatible with the findings of
Presidential Proclamation 8031. Within this Application, provide all information that you
believe will assist the Co-Trustees in determining how your proposed activities are compatible
with the conservation and management of the natural, historic, and cultural resources of the
Papahānaumokuākea Marine National Monument (Monument).
ADDITIONAL IMPORTANT INFORMATION:
●

Any or all of the information within this application may be posted to the
Monument website informing the public on projects proposed to occur in the
Monument.

●

In addition to the permit application, the Applicant must either download the
Monument Compliance Information Sheet from the Monument website OR request
a hard copy from the Monument Permit Coordinator (contact information below).
The Monument Compliance Information Sheet must be submitted to the Monument
Permit Coordinator after initial application consultation.

●

Issuance of a Monument permit is dependent upon the completion and review of the
application and Compliance Information Sheet.

INCOMPLETE APPLICATIONS WILL NOT BE CONSIDERED
Send Permit Applications to:
NOAA/Inouye Regional Center
NOS/ONMS/PMNM/Attn: Permit Coordinator
1845 Wasp Blvd, Building 176
Honolulu, HI 96818
[email protected]
PHONE: (808) 725-5800
FAX: (808) 455-3093
SUBMITTAL VIA ELECTRONIC MAIL IS PREFERRED BUT NOT REQUIRED. FOR
ADDITIONAL SUBMITTAL INSTRUCTIONS, SEE THE LAST PAGE.

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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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Papahānaumokuākea Marine National Monument
Permit Application Cover Sheet

This Permit Application Cover Sheet is intended to provide summary information and status to
the public on permit applications for activities proposed to be conducted in the
Papahānaumokuākea Marine National Monument. While a permit application has been received,
it has not been fully reviewed nor approved by the Monument Management Board to date. The
Monument permit process also ensures that all environmental reviews are conducted prior to the
issuance of a Monument permit.

Summary Information
Applicant Name:    John Doe    
Affiliation:   Papahānaumokuākea Marine National Monument     
Permit Category: Research
Proposed Activity Dates: August 1, 2008 – September 1, 2008
Proposed Method of Entry (Vessel/Plane): Vessel, NOAA Ship HIIALAKAI
Proposed Locations: Shallow water habitat (>100m) around French Frigate Shoals, Lisianski
Island, and Pearl and Hermes Atoll.
Estimated number of individuals (including Applicant) to be covered under this permit: 7
Estimated number of days in the Monument: 30
Description of proposed activities: (complete these sentences):
a.) The proposed activity would…
The annual NWHI RAMP (Reef Assessment and Monitoring Program) cruise will conduct
quantitative surveys of coral, algae, fish, and non-coral invertebrates throughout the NWHI for
the purpose of monitoring the shallow coral reef ecosystems.
b.) To accomplish this activity we would ….
This project is a continuing effort to conduct quantitative surveys of coral, algae, fish, and
non-coral invertebrates throughout the NWHI for the purpose of monitoring shallow coral reef
ecosystems. Surveys for fishes, invertebrates, and corals are non-invasive and can be conducted
visually. Limited numbers of algal voucher specimens will be collected by hand as necessary to
make positive species identifications. The applicant uses non-invasive and non-lethal sampling
techniques.

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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
Page 3 of 14

c.) This activity would help the Monument by …

Annual monitoring surveys are necessary to establish baseline abundance indices of coral reef
organisms, to begin to understand the range of natural spatial and temporal variability that
characterizes the ecosystems of the Monument, and to establish a baseline against which changes
due to the effects of large scale, long-term natural and anthropogenic impacts can be compared.
These baselines will also be useful in documenting the impacts of episodic or localized natural
and anthropogenic perturbations of the environment, such as storm damage and vessel
groundings within the Monument.
Other information or background:
The research consists primarily of non-invasive visual surveys. A limited number of algal
voucher specimens will be collected by hand. The number of specimens collected by the
applicant is the minimum required for proper algal identification.

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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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Section A - Applicant Information
1. Applicant

Name (last, first, middle initial): DOE, John K.
Title: Research Coordinator, Papahanaumokuakea Marine National Monument (NOAA/NOS)
1a. Intended field Principal Investigator (See instructions for more information):
   Jerry Doe, Research Specialist, Papahanaumokuakea Marine National Monument
(NOAA/NOS)

2. Mailing address (street/P.O. box, city, state, country, zip):
NOAA/Inouye Regional Center
NOS/ONMS/PMNM/Attn: Permit Coordinator
1845 Wasp Blvd, Building 176
Honolulu, HI 96818
Phone: (808) 725-5800
Fax: (808) 455-3093
Email: [email protected]
For students, major professor’s name, telephone and email address:      
3. Affiliation (institution/agency/organization directly related to the proposed project):
National Oceanic and Atmospheric Administration/National Ocean Service/National Marine
Sanctuary Program
4. Additional persons to be covered by permit. List all personnel roles and names (if
known at time of application) here (e.g. John Doe, Research Diver; Jane Doe, Field
Technician):
Julie Doe, Research Diver, Papahanaumokuakea Marine National Monument,
[email protected]. Phone number 808-123-4567
Jane Doe, Field Technician, Papahanaumokuakea Marine National Monument,
[email protected]. Phone number 808-123-4567
Jerry Doe, Research Specialist, Papahanaumokuakea Marine National Monument
[email protected]. Phone number 808-123-4567
Data Manager, TBD – will complete in the Compliance Logistics Information Sheet
Benthic Ecologist, TBD – will complete in the Compliance Logistics Information Sheet
SAFEBoat coxswain, TBD – will complete in the Compliance Logistics Information Sheet
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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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Section B: Project Information
5a. Project location(s):
☐ Nihoa Island
☐ Necker Island (Mokumanamana)
☒ French Frigate Shoals
☐ Gardner Pinnacles
Maro Reef
☐ Laysan Island
☒ Lisianski Island, Neva Shoal
☒ Pearl and Hermes Atoll
☐ Midway Atoll
☐ Kure Atoll
☐ Monument Expansion Area
☐ Other

Ocean Based
☐ Land-based☐ Shallow water
☐ Deep water
☐ Land-based☐ Shallow water
☐ Deep water
☐ Land-based☒ Shallow water
☐ Deep water
☐ Land-based☐ Shallow water
☐ Deep water ☐
☐ Land-based☐ Shallow water
☐ Land-based☒ Shallow water
☐ Land-based☒ Shallow water
☐ Land-based☐ Shallow water
☐ Land-based☐ Shallow water

☐ Deep water
☐ Deep water
☐ Deep water
☐ Deep water
☐ Deep water

NOTE: Shallow water is defined by water less than 100 meters in depth.
☐ Remaining ashore on any island or atoll (with the exception of Sand Island,at Midway Atoll
and field camp staff on other islands/atolls) between sunset and sunrise.
NOTE: There is a fee schedule for people visiting Midway Atoll National Wildlife Refuge via
vessel and aircraft.
Location Description:
REA sampling for fishes and benthic flora and fauna will be conducted at three locations: French
Frigate Shoals, Lisianski Island and Pearl and Hermes Atoll. At each location, a stratified
random survey design will be employed to sample coral reef habitat. The stratification scheme
comprises the combination of three reef zones—fore reef, back reef, and lagoon—and three
depth ranges—0 to 6 m, 6 to 18 m, and 18 to 33 m. A sampling ‘site’ denotes an area of 100 m
by 100 m containing coral reef habitat. The target number of sampling sites for each location
was estimated as follows:
At each location, sampling sites will be allocated proportionally among reef zone-depth strata
according to the amount of coral reef habitat within each stratum. Specific site locations to be
sampled within each stratum will be randomly selected from the complete list of stratum sample
sites compiled using a Geographical Information System (GIS). A secondary list of alternative
sampling sites will also be randomly generated for each stratum. In some situations, a randomly
selected site may be determined upon arrival by the field team to be unsuitable for sampling, e.g.,
non-reef habitat, unsafe sea conditions, etc. In the case of unsuitable habitat, adjacent sampling
sites (approximately 100 m in each direction from the original point) will be searched to the
extent possible and substituted for the original site if suitable coral reef habitat is located. Sites
determined to be unsuitable for REA sampling will be substituted with an alternative site from
the secondary sample list.
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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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5b. Check all applicable regulated activities proposed to be conducted in the Monument:
☒ Removing, moving, taking, harvesting, possessing, injuring, disturbing, or damaging any
living or nonliving Monument resource
☐ Drilling into, dredging, or otherwise altering the submerged lands other than by anchoring a
vessel; or constructing, placing, or abandoning any structure, material, or other matter on the
submerged lands
☒ Anchoring a vessel
☐ Deserting a vessel aground, at anchor, or adrift
☐ Discharging or depositing any material or matter into the Monument
☒ Touching coral, living or dead
☐ Possessing fishing gear except when stowed and not available for immediate use during
passage without interruption through the Monument
☐ Attracting any living Monument resource
☐ Sustenance fishing (Federal waters only, outside of Special Preservation Areas, Ecological
Reserves and Special Management Areas)
☐ Subsistence fishing (State waters only)
☒ Swimming, snorkeling, or closed or open circuit SCUBA diving within any Special
Preservation Area or Midway Atoll Special Management Area
6. Purpose/Need/Scope State purpose of proposed activities:
The annual NWHI RAMP (Reef Assessment and Monitoring Program) cruise will conduct
quantitative surveys of coral, algae, fish, and non-coral invertebrates throughout the NWHI for
the purpose of monitoring the shallow coral reef ecosystems. This year, based on a statistical
power analysis and new spatial stratification scheme, revised methods and a new random
stratified site selection protocol will be tested in an attempt to minimize variance, increase
statistical power, and increase the robustness of the resulting derived products. As such, the
cruise will not visit every reef and island in the NWHI, but rather will focus intensively on fewer
sites in order to increase sample sizes and statistical power for the comparison of the old and new
methods. The new methods will be intercalibrated with the previous protocols, so that all data
collected between 2000-2007 and beyond may be incorporated into a continuous time series.
The three proposed locations (French Frigate Shoals, Lisianski/Neva Shoals, and Pearl and
Hermes Atoll) were selected for a number of reasons. First, although this year's RAMP cruise is
testing new protocols and will not be visiting all locations, we will still be collecting valid
monitoring data. Thus, these locations were selected in part because they cover much of the
geographic and latitudinal spread of the NWHI. In addition, these sites represent the two broad
reef types in the NWHI, atolls (French Frigate Shoals, Pearl and Hermes Atoll) and submerged
shallow banks (Lisisanski/Neva Shoals). Finally, the three habitats of the stratification scheme
(forereef, backreef, lagoonal/patch reef) are abundantly represented at these sites.

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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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*Considering the purpose of the proposed activities, do you intend to film / photograph federally
protected species beyond the protocols provided in PMNM Best Management Practices
(https://www.papahanaumokuakea.gov/permit/bestmanagement.html)? Yes ☒ No ☐
If so, please list the species you specifically intend to target.
Hawaiian Monk Seal as authorized by MMPA/ESA permit 12345-67.
For a list of terrestrial species protected under the Endangered Species Act visit:
http://www.fws.gov/endangered/
For a list of marine species protected under the Endangered Species Act visit:
http://www.nmfs.noaa.gov/pr/species/esa/
For information about species protected under the Marine Mammal Protection Act visit:
http://www.nmfs.noaa.gov/pr/laws/mmpa/
7. Answer the Findings below by providing information that you believe will assist the
Co-Trustees in determining how your proposed activities are compatible with the
conservation and management of the natural, historic, and cultural resources of the
Monument:
The Findings are as follows:
a. How can the activity be conducted with adequate safeguards for the cultural, natural and
historic resources and ecological integrity of the Monument?
The proposed activities will have minimal impact on the resources of the region. The research
consists primarily of non-invasive visual surveys. Limited numbers of algal voucher specimens
will be collected by hand as necessary to make positive species identifications. This research is
being conducted in concert with the priorities listed in the current draft NOAA research plan for
the Monument.
b. How will the activity be conducted in a manner compatible with the management direction of
this proclamation, considering the extent to which the conduct of the activity may diminish or
enhance Monument cultural, natural and historic resources, qualities, and ecological integrity,
any indirect, secondary, or cumulative effects of the activity, and the duration of such effects?
The proposed activities will have minimal impact on the resources of the region. The research
consists primarily of non-invasive visual surveys. Limited numbers of algal voucher specimens
will be collected by hand as necessary to make positive species identifications. This research is
being conducted in concert with the priorities listed in the current draft NOAA research plan for
the Monument.
c. Is there a practicable alternative to conducting the activity within the Monument? If not,
explain why your activities must be conducted in the Monument.

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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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There is no practicable alternative to conducting the activities in the Monument. Annual
monitoring surveys are necessary to establish baseline abundance indices of coral reef organisms,
to begin to understand the range of natural spatial and temporal variability that characterizes the
ecosystems of the Monument, and to establish a baseline against which changes due to the
effects of large scale, long-term natural and anthropogenic impacts can be compared. These
baselines will also be useful in documenting the impacts of episodic or localized natural and
anthropogenic perturbations of the environment, such as storm damage and vessel groundings
within the Monument
d. How does the end value of the activity outweigh its adverse impacts on Monument cultural,
natural and historic resources, qualities, and ecological integrity?

The proposed activities have been identified as vital to the future management of the Monument
and will have no adverse impact on the resources, qualities and ecological integrity of the
Monument.
e. Explain how the duration of the activity is no longer than necessary to achieve its stated
purpose.

A minimal amount of time will be spent at each collection location depending on weather and
oceanographic conditions.
f. Provide information demonstrating that you are qualified to conduct and complete the activity
and mitigate any potential impacts resulting from its conduct.

All personnel included in this permit application have extensive experience conducting research
in the Monument, and in the collection techniques utilized. This is a continuance of a multi-year
project.
g. Provide information demonstrating that you have adequate financial resources available to
conduct and complete the activity and mitigate any potential impacts resulting from its conduct.

This cruise and subsequent data analyses are supported by an allocation of 29 days at sea aboard
the NOAA ship HIIALAKAI from NOAA's Office of Marine and Aviation Operations, a line
item in the budget of NOAA's Papahānaumokuākea Marine National Monument, and an
allocation of funds from NOAA's Coral Reef Conservation Program to NOAA Fisheries Pacific
Islands Fisheries Science Center.
h. Explain how your methods and procedures are appropriate to achieve the proposed activity's
goals in relation to their impacts to Monument cultural, natural and historic resources, qualities,
and ecological integrity.

The research consists primarily of non-invasive visual surveys. A limited number of algal
voucher specimens will be collected by hand. The number of specimens collected by the
applicant is the minimum required for proper algal identification.
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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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i. Has your vessel been outfitted with a mobile transceiver unit approved by OLE and complies
with the requirements of Presidential Proclamation 8031?

NOAA ship HIIALAKAI is equipped with a NOAA OLE Vessel Monitoring System
j. Demonstrate that there are no other factors that would make the issuance of a permit for the
activity inappropriate.

There are no other factors that would make the issuance of a permit for the activities
inappropriate.
8. Procedures/Methods:

Benthic community structure survey methods:
Working at depths between 3 to 30 m, each dive takes place within a 100m x 100m cell whose
midpoint has been previously determined by mapping/GIS personnel as part of a stratified
random site selection process. The benthic team, consisting of five divers, enters the water 10-15
minutes after the two-person fish team. Two, 25m transect lines are randomly deployed, with a
surface float on which a GPS receiver is mounted, marking the beginning of each transect line.
One member of the benthic team is responsible for conducting the line-intercept method at
0.25m intervals along the transect lines for the purposes of determining substrate composition,
with a particular focus on determining coral percent cover on a species-specific basis. This diver
is also responsible for taking a number of measurements pertaining to topographic complexity.
Two divers are responsible for measuring the dimensions (length x width x height) of each coral,
by species, whose center falls within a 0.5m belt on each side of the transect line, and for
determining the health status of each colony. In addition, a 0.25m x 0.25m quadrat will be used
within each 5m segment along the transect lines to enumerate, and measure, coral recruits (<
5cm maximum diameter).
A trained phycologist will record benthic cover along the transect lines at 10 cm intervals to
determine percent cover by algae at the lowest level of taxonomic resolution possible, using a
point intercept method. Additionally, a photoquadrat will be used to take high-resolution digital
images to create a historical record of the site. A random swim is used to collect voucher
specimens of algae from the site. A photoquadrat will be used to take high-resolution digital
images to create a historical record of the site.
Finally, visual surveys will be conducted for macroinvertebrates by conducting ten quadrat
enumerations (.25m2 quadrat) at 2 m intervals along the 25 m lines. Target species include
cnidarians (Zoanthids, Actinarians, Hydrocorals), echinoderms (echinoids, holothuroids, and
asteroids), molluscs (bivalves, gastropods, nudibranchs, and cephalopods), and decapod
crustacea.
Fish community structure survey methods:
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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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Working at depths between 3 to 30 m, each dive takes place within a 100m x 100m cell whose
midpoint has been previously determined by mapping/GIS personnel as part of a stratified
random site selection process. The fish team, consisting of two or three divers, will count all
fishes utilizing both a belt transect method and a modified stationary point count (SPC) method.
At each randomly selected site, three 25 meter belt transect lines are surveyed. Two divers swim
side by side along a transect line each recording all fish larger than 20cm observed within a 4
meter wide x 4 meter high belt parallel to their respective side of the transect (200m2 area per
belt, 100m2 per diver). The divers make a second pass along each transects recording all fish less
than 20cm observed within a 2m wide x 4m high belt (100m2 area per line, 50 m2 per diver).
The large fish surveys take approximately 5 minutes to complete while the smaller fish surveys
take about 10 minutes to complete.
Under the SPC method, at each randomly selected site, 1 or 2 two-diver team(s) enter the water
and haphazardly select a survey location. The divers lay down two contiguous 15m lines and
each position themselves in the middle of one of these lines. From this pivot point, the divers
record all individual fish within a 7.5m radius area for a period of 10min. Afterwards, the divers
move to the beginning of their respective 15m lines and count all individuals on a 2m-wide belt
centered on the line. This procedure is repeated once by each team (2 replicates per team). Divers
will be within 15m of each other during these surveys.
NOTE: If land or marine archeological activities are involved, contact the Monument
Permit Coordinator at the address on the general application form before proceeding.
9a. Collection of specimens - collecting activities (would apply to any activity): organisms
or objects (List of species, if applicable, attach additional sheets if necessary):
At each site, voucher specimens of algae (one specimen per species per site) will be collected.
Common name:
See table below:
Common Name
Algae
Algae
Algae
Algae
Algae
Algae
Algae
Algae
Algae

Scientific Name
Caulerpa
Caulerpella
Codium
Halimeda
Bryopsis
Derbesia
Pseudobryopsis
Avrainvillea
Chlorodesmis

Common Name
Algae
Algae
Algae
Algae
Algae
Algae
Algae
Algae
Algae

Scientific Name
Dasya
Heterosiphonia
Hypoglossum
Martensia
Schizoseris
Vanvoorstia
Amansia
Chondria
Chondrophycus
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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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Algae
Algae
Algae
Algae
Algae
Algae

Rhipidosiphon
Rhipilia
Tydemania
Udotea
Palmophyllum
Phyllodictyon

Algae
Algae
Algae
Algae
Algae
Algae

Herposiphonia
Laurencia
Lophosiphonia
Neosiphonia
Polysiphonia
Spriocladia

Scientific name:

See table above.
# & size of specimens:

No more than one voucher specimen per species of algae per site. No more than one 1 gallon
Ziploc bag total volume of wet specimens per site.
Collection location:
Specimens will be collected at sites surveyed by benthic teams at French Frigate Shoals,
Lisianski/Neva Shoals, and Pearl and Hermes Atoll.
☒ Whole Organism ☒ Partial Organism
9b. What will be done with the specimens after the project has ended?
Specimens in frozen and pressed state will be initially deposited in the collections at NMFS
PIFSC CRED and Department of Botany, University of Hawaii at Manoa, for identification and
analysis. Where appropriate, voucher specimens will be deposited in the collection at the B.P.
Bishop Museum, Honolulu, Hawaii.
9c. Will the organisms be kept alive after collection? ☐ Yes ☒ No
N/A
• General site/location for collections:
See 9a. above.
• Is it an open or closed system? ☐ Open ☐ Closed
N/A
• Is there an outfall? ☐ Yes ☐ No
N/A

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Permit Application - Research
OMB Control # 0648-0548
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• Will these organisms be housed with other organisms? If so, what are the other organisms?
N/A
• Will organisms be released?
N/A
10. If applicable, how will the collected samples or specimens be transported out of the
Monument?

A majority of algal specimens will be frozen and transported in NOAA Ship HIIALAKAI’s
scientific freezer. A small number of specimens may be preserved in dilute (5%) formalin for
histological analysis.
11. Describe collaborative activities to share samples, reduce duplicative sampling, or
duplicative research:

To the best of our knowledge, the proposed project is unique in the NWHI and does not duplicate
any other current initiatives. After preliminary analysis, preservation or pressing, and curation,
all algal specimens collected will be made available to bona fide researchers upon request.
12a. List all specialized gear and materials to be used in this activity:

Specimens of fleshy macroalgae will be hand collected. Voucher specimens of crustose coralline
algae may be collected with a geologist's pick and chisel, or by hand (free-living rhodoliths).
12b. List all Hazardous Materials you propose to take to and use within the Monument:

Formalin (as a fixative for some algal specimens).
13. Describe any fixed installations and instrumentation proposed to be set in the
Monument:

N/A
14. Provide a time line for sample analysis, data analysis, write-up and publication of
information:

Initial collections will be reported in the Cruise Report for HI-07-08. Monitoring reports
resulting from this cruise will be finalized (with input from partners and Monument agencies) by
October 2009.
15. List all Applicants’ publications directly related to the proposed project:

None.
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Permit Application - Research
OMB Control # 0648-0548
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Papahānaumokuākea Marine National Monument
Permit Application - Research
OMB Control # 0648-0548
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With knowledge of the penalties for false or incomplete statements, as provided by 18 U.S.C.
1001, and for perjury, as provided by 18 U.S.C. 1621, I hereby certify to the best of my abilities
under penalty of perjury of that the information I have provided on this application form is true
and correct. I agree that the Co-Trustees may post this application in its entirety on the Internet.
I understand that the Co-Trustees will consider deleting all information that I have identified as
“confidential” prior to posting the application.
_________________________________________________________________
Signature
Date
SEND ONE SIGNED APPLICATION VIA MAIL TO THE MONUMENT OFFICE
BELOW:
NOAA/Inouye Regional Center
NOS/ONMS/PMNM/Attn: Permit Coordinator
1845 Wasp Blvd, Building 176
Honolulu, HI 96818
FAX: (808) 455-3093
DID YOU INCLUDE THESE?
☒ Applicant CV/Resume/Biography
☒ Intended field Principal Investigator CV/Resume/Biography
☒ Electronic and Hard Copy of Application with Signature
☒ Statement of information you wish to be kept confidential
☒ Material Safety Data Sheets for Hazardous Materials

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