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Records Abstraction Information
Nguyen, Duc (CDC/OID/NCEZID) (CTR)
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2015-07-26
2026-08-31
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APPENDIX 2 – MEDICAL CHART ABSTRACTION FORM – PA NTM INFECTIONS

Abstractor: 				      Date of abstraction:   ____ / ____ / ____
Case ID:_____________
This patient is a: 	1 [ ] Case	2 [ ] Control

Pathogen
Infection site
Specimen
Date specimen obtained
Test performed
[ ] M. abscessus
[ ] M. chelonae
[ ] M. fortuitum
[ ] M. something
[ ] BSI
[ ] SSI
[ ] Respiratory
[ ] CAUTI
[ ] Skin/soft tissues
[ ] Other_______
[ ] Blood
[ ] Tissue/Biopsy
[ ] BAL/BW
[ ] Urine
[ ] Swab
[ ] Other______
_ _/_ _/_ _
[ ] Culture
[ ] PCR
[ ] Histopath
[ ] Other______







    A. Patient information

Sex:   1 [ ] Male	2 [ ] Female     9 [ ] N/A

Year of birth/Age:__________

Race/Ethnicity:  
1 [ ] White    2 [ ] Afr Am    3 [ ] Hispanic    4 [ ] Asian/PI   5 [ ] AI/AN      
7 [ ] Other, specify:_______  9 [ ] Unknown

Hospital/clinic admission date: __ __/__ __/__ __  (mm/dd/yy)  
	
	Admission diagnosis______________________________________________

Onset date: __ __/__ __/__ __  (mm/dd/yy)
	
	Chief complaints_________________________________________________

    B. History and Physical

Secondary Diagnoses (patient medical history):
[ ] CAD        		[ ] Rheumatoid Arthritis         [ ] Solid tumor (non-metastatic)                          [ ] CHF        		[ ] Connective tissue disease  	[ ] Metastatic solid tumor
[ ] PVD        		[ ] Mild liver disease  		[ ] Lymphoma
[ ] Dementia       		[ ] Moderate-to-severe liver disease   [ ] PUD
[ ] Chronic pulmonary disease [ ] Diabetes w/o complications [ ] AIDS  (CD4<200 or OI)       
[ ] Hemiplegia       		[ ] Diabetes w/end organ disease	[ ] Inflammatory bowel disease
[ ] Moderate to severe renal disease (Cr>=3.0, h/o uremia, transplant)     [ ] Ulcer disease
[ ] Leukemia   [ ] Obesity    [ ] Hypertension
Other:__________________________________________________________________ 

Current alcohol use 1 [ ] Yes, amount (drinks/week): _________  2 [ ] No  9 [ ] Unknown
Smoking status (at admission) 1 [ ] Yes, amount (pack-years):___2 [ ] No  9 [ ] Unknown
Any prior history of smoking?  1 [ ]Yes, pack-year history ___ [ ] No 9 [ ] Unknown  

Other history related to this hospitalization
________________________________________________________________________
________________________________________________________________________
________________________________________________________________________
________________________________________________________________________
________________________________________________________________________

Any medications used prior to admission
________________________________________________________________________
________________________________________________________________________
________________________________________________________________________


    C. Hospital course

Patient location/procedures/movements in the hospital … days before first positive culture:
(procedures may include central line insertion/care, catheter insertion, ultrasound, endoscopy…)
Building
Tower
Unit
Room 
Dates
Procedure
Staff encounter
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______
______


    D. If BSI, consider the following

Central line is present: [ ] Yes		[ ] No
If Yes, then

Date inserted
Type
Active during 1 week before culture
 __ __/__ __/__ __  
[ ] CVC
[ ] PICC
[ ] Port
[ ] Swan-Ganz
[ ] Other___________
[ ] Yes		[ ] No
 __ __/__ __/__ __  
[ ] CVC
[ ] PICC
[ ] Port
[ ] Swan-Ganz
[ ] Other___________
[ ] Yes		[ ] No

Central line access (within 1 week of positive culture)

Date accessed
Staff
Procedure
Saline flush
Medications administered
_ _/_ _/_ _
___________
[ ] Flush
[ ] Dressing change
[ ] Med administration
[ ] Other____
[ ] Yes	[ ] No
__________ (note if something is multi-dose vial)
_ _/_ _/_ _
___________
[ ] Flush
[ ] Dressing change
[ ] Med administration
[ ] Other____
[ ] Yes	[ ] No
__________ (note if something is multi-dose vial)

Other medications administered parenterally (not via central line)

Date 
Staff
Route/site
Medications administered
_ _/_ _/_ _
___________
[ ] IV_____________
[ ] IM_____________
[ ] SC_____________
__________ (note if something is multi-dose vial)
_ _/_ _/_ _
___________
[ ] IV_____________
[ ] IM_____________
[ ] SC_____________
__________ (note if something is multi-dose vial)


Did patient have a shower/bath during the week before positive culture [ ] Yes	[ ] No

	Date shower 1: __ __/__ __/__ __
Date shower 2: __ __/__ __/__ __
Date shower 3: __ __/__ __/__ __


    E. If SSI, consider the following


Weight__________lbs/kg               Height______________in/cm on admission date

Highest glucose in 48 hours prior to surgery:_________Date: __ __/__ __/__ __ Time: __:__

HgbA1c value within 3 months of surgery (take most recent value):______Date: __ __/__ __/__ __

Pre-op albumin level:_________ Date: __ __/__ __/__ __ Time: __:__

ASA Score: _________         NYHA Score:__________           Preop EF:_______________

Date of surgery __ __/__ __/__ __

Antibiotics used

	Pre-op Abx use 	[ ] Yes		[ ] No

Name
Route
Dose
Date
Time start
________
[ ] IV  [ ] IM
________
_ _/_ _/_ _
__:__
________
[ ] IV  [ ] IM
________
_ _/_ _/_ _
__:__

Intra-op Abx use	 [ ] Yes		[ ] No

Name
Route
Dose
Date
Time start
________
[ ] IV  [ ] IM
________
_ _/_ _/_ _
__:__
________
[ ] IV  [ ] IM
________
_ _/_ _/_ _
__:__

Intra-op Abx use	 [ ] Yes		[ ] No

Name
Route
Dose
Date
Time start
________
[ ] IV  [ ] IM
________
_ _/_ _/_ _
__:__
________
[ ] IV  [ ] IM
________
_ _/_ _/_ _
__:__


Antiseptic showering □ Yes, type and date given: ____________________       □ No
Pre-op hair removal: □ none     □ razor 	□ clipper □ Other ______________________
Pre-op prep: □ CHG 	□ Betadine □ Other ______________________

Any special skin preparation: ______________________________________________________
______________________________________________________________________________


Surgical procedures (briefly, e.g., CABGx2, LIMA harvest…):
________________________________________________________________________

If this is a CABG, what is the harvest site_____________________________

Surgery start time:___________
Surgery stop time:___________

OR Room #: ______

Surgeon ________________________	Anesthesiologist _________________________

RFNA____________________________	CRNA _________________________

RFNA____________________________	Perfusionist _____________________________

Scrub Nurse(s)___________________	Personal Scrub ___________________________

Circulator 1 _______________________	Circulator 2_________________________

Other (name/title)__________________	Other (name/title)_________________________


Did patient have Cardiopulmonary Bypass (CBP)? 	1 [ ] Yes  2 [ ]  No  9 [ ] Unknown

Intraoperative US (e.g., TEE) performed:	1 [ ] Yes  2 [ ]  No  9 [ ] Unknown         
 If yes, by whom?  _________________

Cardioplegia or similar intervention 1 [ ] Yes  2 [ ]  No  9 [ ] Unknown
	If yes, what was used for the procedure____________________________________

Other IV drugs during surgery?

Type
Dose
Route
Time start
Time stop


[ ] IV  [ ] IM




[ ] IV  [ ] IM




[ ] IV  [ ] IM




[ ] IV  [ ] IM




[ ] IV  [ ] IM



Transfusions during surgery?

Type
Dose
Time start
Time stop

















Highest glucose during procedure:____________ Time: __:__


List all the devices or equipment that were inserted into patient’s body (valve, grafts, drains, staple/suture, wound dressing…)

Instrument type
Name
Catalog #
Serial #
Check if left in place
Date removed






























Grafts

















Staples/sutures























Drains






























Other intra-operative findings (including cooling methods, drugs in/on chest, dressing, ointment…):
________________________________________________________________________________
________________________________________________________________________________
________________________________________________________________________________
________________________________________________________________________________
________________________________________________________________________________


Post operation

ICU recovery room _______________ Admission date: __ __ /__ __/__ __ Time:__ __:__ __

Did patient have warmers (forced air warming blanket, etc)…1 [ ] Yes  2 [ ]  No  9 [ ] Unknown 

Medications (suppressors, immunosuppressant) after surgery?

Type
Dose
Route
Date and time start
Date and time stop


[ ] IV  [ ] IM




[ ] IV  [ ] IM




[ ] IV  [ ] IM




[ ] IV  [ ] IM



Transfusions after surgery?

Type
Dose
Date and time start
Date and time stop













Highest glucose within 24 hours post operation:__________ Date: __ __/__ __/__ __ Time: __:__


Wound care after surgery:

Dressing change (one change per line, regardless of products used) or wound cleansing

Dressing/cleansing product
Date change
Time change
Staff name
Note


























Date of dressing removal __ __ /__ __/__ __   [ ] N/A

Date of staple/suture removal __ __ /__ __/__ __  [ ] N/A

Date of drain removal  __ __ /__ __/__ __  [ ] N/A

Other interventions in or around the wound (date) _______________________________________

Did patient have a shower/bath during hospitalization after surgery  [ ] Yes  	[ ] No

	Date shower 1: __ __/__ __/__ __
Date shower 2: __ __/__ __/__ __
Date shower 3: __ __/__ __/__ __

If SSI is related to endoscopy/laparoscopy

Date
Type and site of endoscopy
Interpretation 
Meds used during bronchoscopy
Location (Bedside, Radiology) and staff
__ __ /__ __/__ __
___________
________________
_______________
________________
__ __ /__ __/__ __
___________
________________
_______________
_______________
__ __ /__ __/__ __
___________
________________
_______________
_______________




Abx used before admission for SSI	1 [ ] Yes         2 [ ] No       9 [ ] Unknown
	If Yes, start date__ __/__ __/__ __ and drug name______________________

SSI symptoms:

Fever	1 [ ] Yes         2 [ ] No       9 [ ] Unknown

Wound findings: 1 [ ] Superficial 2 [ ] Deep  3 [ ] Organ space  

Site of the wound  _____________  9 [ ] Unknown

Drainage			1 [ ] Yes	            2 [ ] No

Swelling			1 [ ] Yes	            2  [ ] No

Erythema  			1 [ ] Yes	            2  [ ] No     

Pain 				1 [ ] Yes	            2 [ ] No


Other symptoms:_________________________________________________________________

Wound Classification: □ Clean     □ Clean-Contaminated     □ Contaminated     □ Dirty

Wound treatment:

Surgical Debridement	1 [ ] Yes	            2 [ ] No		Date	__ __ /__ __/__ __
	
Wound Vac		1 [ ] Yes	            2 [ ] No		Date	__ __ /__ __/__ __

Flap			1 [ ] Yes	            2 [ ] No		Date	__ __ /__ __/__ __

Antibiotics  		1 [ ] Yes	            2 [ ] No     	start date __ __ /__ __/__ __
Specify agent/dose/route:________________________________________

Other medications	1 [ ] Yes	           2 [ ] No     	Date	__ __ /__ __/__ __ Specify:_________________________________

    F. If respiratory infections, consider the following

List RTs who had contact with the patient before first positive culture date:
Name
Date
_______________________
__ __ /__ __/__ __
_______________________
__ __ /__ __/__ __
_______________________
__ __ /__ __/__ __
_______________________
__ __ /__ __/__ __

Respiratory Meds received before first positive culture?   □ YES   □NO
Include O2, NO or other inhaled agents (e.g. albuterol, anesthesia meds, inhaled antibiotics, inhaled asthma meds) in this section
Name (use generic name)
Type/Route (eg MDI, Neb, nasal canula)
Date administered
_____________
_______________
__ __ /__ __/__ __
_____________
_______________
__ __ /__ __/__ __
_____________
_______________
__ __ /__ __/__ __
_____________
_______________
__ __ /__ __/__ __

Antibiotics received before first positive culture?	□YES		□NO
Name 
Dose
Route
Dates administered
_____________
_____________
[ ] IV  [ ] IM  [ ] PO
__ __ /__ __/__ __
_____________
_____________
[ ] IV  [ ] IM  [ ] PO
__ __ /__ __/__ __
_____________
_____________
[ ] IV  [ ] IM  [ ] PO
__ __ /__ __/__ __
_____________
_____________
[ ] IV  [ ] IM  [ ] PO
__ __ /__ __/__ __

Routine care items/treatments/nutrition received before first positive culture
Mouthwash: Yes No 	If yes, brand__________________________
Lip balm: Yes No		If yes, brand__________________________
Nasal spray: Yea No	If yes, brand__________________________
Deodorant: Yes No	If yes, brand__________________________
Chlorhexidine: Yes No	If yes, brand__________________________
Antiseptics: Yes No	If yes, name__________________________
Tube feeds: Yes No	If yes, tube type_______________________
				Feed fluid name_______________________
Shaving gel: Yes No	If yes, brand__________________________
Other products:
Name_______________________________ Brand____________________________
Name_______________________________ Brand____________________________
Name_______________________________ Brand____________________________
Name_______________________________ Brand____________________________
Were steroids administered before first positive culture? □Yes 	□No
If yes, dose __________________ dates administered__/__/____-__/__/____
							__/__/____-__/__/____

Was suctioning done: □Yes 		□No
If yes, dates __/__/____-__/__/____
How many times did the patient receive suctioning within the exposure window: _______________ 
Any solutions/fluid used during the procedure_____________________

Was bronchoscopy done: □Yes	□ No
If yes fill the table below:

Date
Interpretation 
Meds used during bronchoscopy
Location (Bedside, Radiology) and staff
Specimen obtained
__ __ /__ __/__ __
__________________
_______________
________________
1 [ ] Yes  2 [ ]  No
__ __ /__ __/__ __
__________________
_______________
_______________
1 [ ] Yes  2 [ ]  No
__ __ /__ __/__ __
__________________
_______________
_______________
1 [ ] Yes  2 [ ]  No

Ventilation
Did patient require mechanical ventilation before first positive culture date?     □YES     □ NO  	    
Vent brand/serial number________________________________
If yes, date intubated __/__/____
Location where intubated________________________
Date extubated __/__/____

Did the patient have or receive a tracheostomy during the exposure window?   □YES     □NO
If yes, date procedure performed __/__/____
Location where tracheotomy done________________________

Did patient require CPAP?	   □YES    □NO 	
If yes, # of days on CPAP before first positive culture_______

Did patient require BIPAP?   □YES      □ NO  
 If yes, # of days on BIPAP before first positive culture ________

    G. If CAUTI, consider

Is patient incontinence  1 [ ] Yes	            2 [ ] No

Catheter information

Date inserted
Date withdrawn
Type
 __ __/__ __/__ __  
__ __/__ __/__ __  
[ ] Urinary catheter
[ ] Suprapubic catheter
[ ] Temporary relief
[ ] Other___________
 __ __/__ __/__ __  
__ __/__ __/__ __  
[ ] Urinary catheter
[ ] Suprapubic catheter
[ ] Temporary relief
[ ] Other___________

If catheter was accessed or maneuvered, provide information

Date accessed
Staff
Procedure
Bag drain
_ _/_ _/_ _
___________
___________
[ ] Yes	[ ] No
_ _/_ _/_ _
___________
___________
[ ] Yes	[ ] No

    H. Patient symptoms and other laboratory data

[ ] Fever
[ ] Chills
[ ] Abdominal pain
[ ] Cough
[ ] Hemoptysis
[ ] Dyspnea
[ ] Respiratory failure
[ ] Shock


CBC and chemistry

Date specimen obtained
WBC
ALT
AST
…
_ _/_ _/_ _
___________
___________
___________
___________
_ _/_ _/_ _
___________
___________
___________
___________

Urinalysis

Date specimen obtained
WBC
RBC
…
…
_ _/_ _/_ _
___________
___________
___________
___________
_ _/_ _/_ _
___________
___________
___________
___________


Other culture

Date specimen obtained
Source of specimen
Test
Result
…
_ _/_ _/_ _
___________
[ ] Culture
[ ] PCR
[ ] Histopath
[ ] Other______
___________
___________
_ _/_ _/_ _
___________
[ ] Culture
[ ] PCR
[ ] Histopath
[ ] Other______
___________
___________



    I. Patient treatment and outcome

Antibiotic received

Name
Route
Dose
Date start
Date stop
______________
[ ] IV  [ ] IM  [ ] PO
_________
_ _/_ _/_ _
_ _/_ _/_ _
______________
[ ] IV  [ ] IM  [ ] PO
_________
_ _/_ _/_ _
_ _/_ _/_ _


Patient outcome of this hospitalization?  
1 [ ] Recover and discharged  2 [ ] Died   3 [ ] Still in hospital    
4 [ ] Other____________________ 9 [ ] Unknown