Cities - Weekly - NMI Implementation

National Notifiable Diseases Surveillance System (NNDSS)

Att 6 - Laboratory Data_CR_06072021.xlsx

Cities - Weekly - NMI Implementation

OMB: 0920-0728

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Data Element Name Data Element Description Value Set Code CDC Priority (Legacy) CDC Priority (New)
Test Performed Name Name of test or analyte performed. The lab test that was run on the specimen. This is also referred as "Resulted Test Name"
PHVS_LabTestName_CDC

Test Result - Coded Qualitative (non-organism) Coded Qualitative Test Result Value PHVS_LabTestResultQualitative_CDC

Test Result - Coded Organism Coded result - Organism (SNOMED) Result Value, used where OBX-2 is CE or CWE value type PHVS_Microorganism_CDC

Test Result - Numeric Numeric Result Value, used where OBX-2 is SN or NM value type N/A

Units of Measure Numeric Result Value, used where OBX-2 is SN or NM value type PHVS_UnitsOfMeasure_CDC

Test Result - Text Lab Result Text Value used where OBX-2 is TX. Textual result value, used if result is neither numeric nor coded. N/A

Test Result -Interpretation Flag Abnormal Flags used for laboratory result interpretation (OBX-8) by Lab (not Epidemiologist's Interpretation).
The interpretation flag identifies a result that is not typical as well as how its not typical. Examples: Susceptible, Resistant, Normal, Above upper panic limits, below absolute low.
PHVS_AbnormalFlag_HL7_27

Test Result - Reference Range Reference Range N/A

Observation Result Status Result Status (OBX-11). The Result Status is the degree of completion of the lab test.
PHVS_ObservationResultStatus_HL7_2x

Specimen collection date Date/Time of Observation in OBX segment for ELR infers to the specimen collection date N/A

Test Method The technique or method used to perform the test and obtain the test results. Observation Method. Examples: Serum Neutralization, Titration, dipstick, test strip, anaerobic culture. PHVS_LabTestMethods_CDC

Specimen Analyzed Date Lab Report Date - Date/Time of the Analysis. N/A

Performing Laboratory Name Name of Laboratory that performed the lab test. Performing Organization Name N/A

Performing Person Name Performing Organization Medical Director / Performing Person Name. N/A

Test Result Comments Comments having to do specifically with the lab result test. These are the comments from the NTE segment if the result was originally an Electronic Laboratory Report. N/A

Specimen ID A laboratory generated number that identifies the specimen related to this test. N/A

Specimen Type The type of specimen used in testing the Resulted Lab Test. PHVS_Specimen_CDC

Specimen Source Site This indicates the physical location of the subject where the specimen originated. Examples include: Right Internal Jugular, Left Arm, Buttock, Right Eye, etc. PHVS_BodySite_CDC

Specimen Description Text description of the specimen N/A

Specimen Collection Date/Time The date the specimen was collected. N/A

Filler Order # A laboratory generated number that identifies the test/order instance. N/A

Test Ordered Name Test that was ordered by the physician / provider. This could be a lab test panel which would lead to several lab tests. PHVS_LabTestOrderables_CDC

Observation Date/Time Observation Date/Time (OBR-7) N/A

Results Rpt/Status Chng - Date/Time
Results Rpt/Status Chng - Date/Time N/A

Result Status Result Status PHVS_ResultStatus_HL7_2x

Reason for Study
Reason for Study N/A

Placer Order Number Placer Order Number N/A

Ordering Provider Ordering Provider N/A

Specimen ID Placer Assigned Identifier Specimen ID Placer Assigned Identifier N/A

Specimen ID Filler Assigned Identifier Specimen ID Filler Assigned Identifier N/A

Specimen Role Specimen Role PHVS_SpecimenRole_CDC

Specimen Collection Amount Specimen Collection Amount N/A

Specimen Received Date/Time Specimen Received Date/Time N/A

Specimen Action Code HL7 version 2.x Specimen action code used in chapter(s) 4; HL7 table 065 PH_SpecimenActionCode_HL7_2x

Parent Universal Service Identifier Parent universal service identifier is optionally allowed for labs that do not support unique placer or filler order numbers N/A

Unique Identifier for Current Sample Isolate identifier unique for each isolate within laboratory N/A

Genotype Sequence Identifies the genotype sequence of an organism TBD

Serotype Identifies the serotype of an organism. TBD

Serogroup Identifies the serogroup of an organism. TBD

Species identifies the group of organisms or animals. TBD

Performing Laboratory Type Performing laboratory type TBD

Date/Time of Lab Result Date result sent from reporting laboratory N/A

Specimen Type sent to CDC Specimen(s) sent to CDC PHVS_YesNoUnknown_CDC

Date Specimen Sent to CDC Date specimen sent to CDC N/A

Microorganism Identified in Isolate Pathogen /Organism Identified in Isolate. TBD

Isolate Identifier Isolate identifier unique for each isolate within laboratory. N/A

Antimicrobial Susceptibility Specimen Type Antimicrobial Susceptibility Specimen Type (e.g. Exudate, Blood, Serum, Urine) TBD

Antimicrobial Specimen Collection Site Anatomic site where the specimen was collected (e.g. Urethra, Throat, Nasopharynx) TBD

Antimicrobial Susceptibility Specimen Collection Date Antimicrobial Susceptibility Specimen Collection Date N/A

Antimicrobial Susceptibility Test Type Antimicrobial Susceptibility Test Type would includes drugs, enzymes, PCR and other genetic tests to detect the resistance against specific drugs. TBD

Antimicrobial Susceptibility Test Method Antimicrobial Susceptibility Test Method (e.g. E-Test, MIC, Disk Diffusion) TBD

Antimicrobial Susceptibility Test Interpretation Antimicrobial Susceptibility Test Interpretation (e.g. Susceptible, Resistant, Intermediate, Not tested) TBD

Antimicrobial Susceptibility Test Result Quantitative Value Antimicrobial Susceptibility Test Result Numerical Value (e.g. Quantitative MIC values, Disk Diffusion size in mm) N/A

Antimicrobial Susceptibility Test Result Numerical Value Units Antimicrobial Susceptibility Test Result Numerical Value Units (e.g. microgram/ml, mm) TBD

Antimicrobial Susceptibility Test Result Coded Quantitative Antimicrobial Susceptibility Test Result - Coded Quantitative. List of coded values (i.e. valid dilutions) to represent the antimicrobial susceptibility test result. TBD

Isolate sent to State Public Health Lab Was the isolate sent to a state public health laboratory? (Answer 'Yes' if it was sent to any state lab, even if it was sent to a lab outside of the case's state of residence) PHVS_YesNoUnknown_CDC
TBD










6/7/2021



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